Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0780211.1b.1b with 3 members (proprotein convertase subtilisin/kexin type)

Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata / Euteleostomi /

... /

Sarcopterygii / Tetrapoda / Amniota / Sauria / Archelosauria / Archosauria / Neognathae / Passeriformes /

Passeroidea

Completeness score: 1.00

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This HOG has 59 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0780211.1b.1b	425	163	proprotein convertase subtilisin/kexin type
2	HOG:E0475096	48	119	domain-containing protein
3	HOG:E0540077	21	16	Derived by automated computational analysis using gene prediction method Gnomon
4	HOG:E0983699.5b	15	17	peptidase S8 and S53 subtilisin kexin sedolisin
5	HOG:E0780211	14	176	proprotein convertase subtilisin/kexin type
6	HOG:E0396097.1b	10	41	domain-containing protein
7	HOG:E0780211.1b	9	169	proprotein convertase subtilisin/kexin type
8	HOG:E0794308.1b.3a	7	7	domain-containing protein
9	HOG:E0780211.1b.1b.2b	6	2	proprotein convertase subtilisin/kexin type
10	HOG:E0780211.1b.1b.2a	6	2	proprotein convertase subtilisin/kexin type
11	HOG:E0780211.1b.1b.1b	6	2	proprotein convertase subtilisin/kexin type
12	HOG:E0990642.138cfu	5	7	abc transporter
13	HOG:E0911743.3b	5	7	fibronectin type III domain protein
14	HOG:E0780211.1b.1b.1a	5	2	proprotein convertase subtilisin/kexin type
15	HOG:E0794308.1a.1b	4	4	domain-containing protein
16	HOG:E0794308.1a.1a	4	2	domain-containing protein
17	HOG:E0990642.138bpn	3	5	abc transporter
18	HOG:E0814636.2h	3	2	proprotein convertase subtilisin/kexin type
19	HOG:E0814636	3	593	proprotein convertase subtilisin/kexin type
20	HOG:E0794308.1c.7a	3	5	domain-containing protein
21	HOG:E0794308.1a	3	8	domain-containing protein
22	HOG:E0780211.1b.1b.3b	3	1	proprotein convertase subtilisin/kexin type
23	HOG:E0780211.1b.1b.3a	3	1	proprotein convertase subtilisin/kexin type
24	HOG:E0780211.1a	3	2	proprotein convertase subtilisin/kexin type
25	HOG:E0540077.1a	3	2	Derived by automated computational analysis using gene prediction method Gnomon

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